| (Return to Main) | CONSERVED CIS-ACTING SEQUENCES OF RNA VIRUSES |
Single-stranded, plus-sense; 2 RNA genome segments
e.g., Nodamura (NOD), flock house (FHV), black beetle (BBV), Boolarra (BoV), Manawatu, gypsy moth, striped jack nervous necrosis viruses.
5'end 3' end BBV GUUUU GAAACAAACAAAACAGAAAAGC.....GUUCUAGCCCGAAAGGGCAGAGGU BBV1G K02560 FHV -----C--------U-------------.....------------------------ FHVAB12 X77156RNA 2
5'end 3' end BBV GUAAACAAUUCCAAGUUCCAAAAUGGUU.....CUGUUUAAGUCAACAGACUAAGGU NOBBVRN2 X00956 FHV ----------------------------.....-A---------------------- FHVRNA2 X15959 BoV -A-UU--- --- -GA-GCC-C-ACG.....--A---- --------------N BOVRNA2 X15960 NOD -------- ---- -AA--UC-----A.....UCUC-AGG---UU--AC--CUU-N NOVRNA2 X15961
Note divergence of the 3' sequences of NOD RNA 2
| (Return to Main) | Conserved cis-acting sequences of RNA viruses |
| Send suggestions and comments to: huang@borcim.wustl.edu Henry V. Huang Department of Molecular Microbiology, Box 8230 Washington University School of Medicine St. Louis, MO 63110-1093 USA | Tel 314-362-2755 FAX 314-362-1232 | |